Polygenic risk scores can predict lithium response in patients with bipolar disorder, study
Australia: A combination of transdiagnostic genetic and clinical data leads to large improvements in lithium response prediction in patients with bipolar disorder (BD), reports an article published in The British Journal of Psychiatry.
Bipolar disorder is associated with episodes of mood swings ranging from depressive lows to manic highs. Lithium is widely viewed as a gold-standard, first-line maintenance treatment for BD. Approximately one-third of patients with BD do not respond to lithium, and nearly two-thirds have a partial response to lithium during acute manic episodes. Likewise, approximately two-thirds of patients on lithium maintenance therapy do not show a satisfactory response. In addition to efficacy issues, lithium has a range of side effect that includes an increased risk of renal failure and suppression of thyroid and parathyroid function. Thus, it is essential to identify potential non-responders to lithium and need to better tailor lithium treatment for individual patients. Response to lithium in patients with bipolar disorder is associated with clinical and transdiagnostic genetic factors. The predictive combination of these variables might help clinicians identify patients who will respond to lithium treatment.
Micah Cearns, University of Adelaide, Australia, and colleagues conducted analyses to test the predictive ability of combined transdiagnostic genetic and clinical data for lithium response prediction in patients with bipolar disorder.
Researchers utilized genetic and clinical data (n = 1034) collected as part of the International Consortium on Lithium Genetics (ConLi+Gen) project. Polygenic risk scores (PRS) were computed for schizophrenia and major depressive disorder and then combined with clinical variables using a cross-validated machine-learning regression approach.
Key findings of the analysis,
• The linear model composed of clinical variables, PRS variables, and interaction terms between them, explained 5.1% (P = 0.0001) of variance in lithium response.
• The best performing non-linear model using only clinical variables explained 8.1% of the variance in lithium response.
• A priori genomic stratification improved non-linear model performance to 13.7% and improved the binary classification of lithium response. This model stratified patients based on their meta-polygenic loadings for major depressive disorder and schizophrenia and then trained using clinical data.
The authors conclude that the present study is the first to provide evidence for the combined predictive ability of routine clinical data and PRS for lithium response.
Using PRS to first stratify patients genetically and then train machine-learning models with clinical predictors led to large improvements in lithium response prediction over other forms of unimodal and multimodal modeling. Clinical data explained the most variance and both clinical and PRS data showed non-linear relationships with lithium response.
In the future, the present approach, with other PRS and biological markers may help identify patients, most likely to respond to lithium treatment, the authors commented.
Reference:
Cearns, M., Amare, A., Schubert, K., Thalamuthu, A., Frank, J., Streit, F., . . . Baune, B. (2022). Using polygenic scores and clinical data for bipolar disorder patient stratification and lithium response prediction: Machine learning approach. The British Journal of Psychiatry, 220(4), 219-228. doi:10.1192/bjp.2022.28
